> For the complete documentation index, see [llms.txt](https://cgps.gitbook.io/pathogenwatch/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://cgps.gitbook.io/pathogenwatch/how-to-use-pathogenwatch/genomic-neighbourhood-search.md).

# Genomic Neighbourhood Search

- [Context search overview](https://cgps.gitbook.io/pathogenwatch/how-to-use-pathogenwatch/genomic-neighbourhood-search/context-search-overview.md): The basic of how the search tool works
- [Single genome seach](https://cgps.gitbook.io/pathogenwatch/how-to-use-pathogenwatch/genomic-neighbourhood-search/single-genome-seach.md): How to generate a context for a single genome
- [Collection search](https://cgps.gitbook.io/pathogenwatch/how-to-use-pathogenwatch/genomic-neighbourhood-search/collection-search.md): Exploring the genomic neighbourhood for a collection of genomes
- [The cluster viewer](https://cgps.gitbook.io/pathogenwatch/how-to-use-pathogenwatch/genomic-neighbourhood-search/the-cluster-viewer.md): How to use the interactive cluster viewer