> For the complete documentation index, see [llms.txt](https://cgps.gitbook.io/pathogenwatch/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://cgps.gitbook.io/pathogenwatch/technical-descriptions-of-analysis-tools/plasmid-annotation.md).

# Plasmid Annotation

- [Plasmidfinder](https://cgps.gitbook.io/pathogenwatch/technical-descriptions-of-analysis-tools/plasmid-annotation/plasmidfinder.md): Identification and typing of plasmid replicons in whole-genome sequencing (WGS).