📜Release Notes 2025

Pathogenwatch release notes for 2025

v23.4.1

9th July

Updated

• Kleborate has been updated to version v3.2.3 and the ciprofloxacin columns added to the CSV download. All Klebsiella genomes have been updated to the latest version.

• Kaptive has been updated to version v3.1.0 and all K. pneumoniae complex, K. oxytoca complex and A. baumanii updated.

v23.4.0

10th June

Fixed

• The website build system, so that releases are correctly numbered again.

Updated

• N. gonorrhoeae NG-STAR assignments are now based on the original source classifications at https://ngstar.canada.ca/, which in effect changes the penA allele nomenclature to the community standard. The allele database was updated on 15th May 2025 and assignments have been updated for all genomes.

• S. pneumoniae serotype assignments have been updated to SeroBA v2.0.4.

v23.3.0-0

9th May

Updated

• Klebsiella pneumoniae complex cgMLST profiles were downloaded from the Pasteur on the 24th April 2025 and the current genomes updated to the latest assignments.

• The Klebsiella LIN code profiles were also updated at the same time and the current genomes have been updated. The LIN code search engine was also improved and decoupled from the cgMLST updates, which will allow more frequent updates of LIN codes in Pathogenwatch.

v23.2.0

28th February

Updated

• Kleborate was updated to v3.1.3 and all Klebsiella genomes updated.

v23.1.5

9th January

Fixed

• OmpK variants in Klebsiella pneumoniae are now correctly reported when present in the AMR genotype download from the Collection Viewer.