📜Release Notes 2025
Pathogenwatch release notes for 2025
v23.4.4
18th July
Fixed
Excel does not detect Unicode characters by default, and so was not displaying Kleborate and Kaptive CSV downloads correctly (other spreadsheet software appears to work correctly). These files now include an invisible marker character at the start to trigger the correct behaviour in Excel (and Office 365).
Updated
Kleborate has been updated to v3.2.4 for all Klebsiella.
v23.4.2
18th July
Fixed
The Kleborate CSV download now correctly includes the values of the
num_resistance_classesandnum_resistance_genesfields.
v23.4.1
9th July
Updated
Kleborate has been updated to version v3.2.3 and the ciprofloxacin columns added to the CSV download. All Klebsiella genomes have been updated to the latest version.
Kaptive has been updated to version v3.1.0 and all K. pneumoniae complex, K. oxytoca complex and A. baumanii updated.
v23.4.0
10th June
Fixed
The website build system, so that releases are correctly numbered again.
Updated
N. gonorrhoeae NG-STAR assignments are now based on the original source classifications at https://ngstar.canada.ca/, which in effect changes the penA allele nomenclature to the community standard. The allele database was updated on 15th May 2025 and assignments have been updated for all genomes.
S. pneumoniae serotype assignments have been updated to SeroBA v2.0.4.
v23.3.0-0
9th May
Updated
The Klebsiella LIN code profiles were also updated at the same time and the current genomes have been updated. The LIN code search engine was also improved and decoupled from the cgMLST updates, which will allow more frequent updates of LIN codes in Pathogenwatch.
v23.2.0
28th February
Updated
Kleborate was updated to v3.1.3 and all Klebsiella genomes updated.
v23.1.5
9th January
Fixed
OmpK variants in Klebsiella pneumoniae are now correctly reported when present in the AMR genotype download from the Collection Viewer.
Last updated