📜Release Notes 2024
Pathogenwatch release notes for 2024
v22.3.1 - v22.3.8
8-9th June
These releases represent a batch of updates mostly focused on improving the stability and robustness of the platform, especially when serving larger numbers of concurrent users.
Updated
Database server, software and drivers for improved performance
Fixed
A set of potentially slow database queries were identified and optimised
A bug that prevented the building of trees for collections containing duplicate genomes in some cases.
v22.3.0
10th June
Updated
S. pneumoniae GPSC strain assignments have been updated to the v8 scheme.
v22.2.0
17th May
Added
MLST assignments using the PubMLST E. cloacae species complex scheme have been added for E. chengduensis, E. chuandaensis and E. pasteurii. The last of these species is not currently recognised by Speciator and is likely to be assigned to another member of the complex. However, MLST will should still be run for them.
v22.1.5
17th May
Updated
Internal configuration update to ensure service stability.
v22.1.3
15th April
Updated
The cgMLST profile single linkage clustering tool has been refactored to reduce memory and CPU use. There should be no impact on the results.
v22.1.0
20th January
Updated
All cgMLST assignments have been updated to the latest version of the MLST code, with the schemes updated to 08/12/2023. This is includes several bug fixes, and we expect some significant improvements to the cgMLST profile-base clustering. Due to the complexity of the update, if you see any issues, please do get in touch.
v22.0.0
19th January
New
PopPUNK cluster assignments for Vibrio cholerae, provided by our Vibriowatch collaboration. All V. cholerae genomes have been updated to include their cluster assignment.
Removed
After further review, the previous Vista biotype assignments have been deemed unreliable. We would recommend that users do not rely on the previous results. A new version is under development by our collaborators at the Wellcome Sanger Institute.
Last updated