PopPUNK

S. pneumoniae GPSC strain assignment

About

Method

PopPUNK uses a K-mer based algorithm to rapidly search a query genome against the reference database. Each cluster is identified by a numerical code. For full technical details, please follow the link to their website and documentation.

How to cite

If you use the results from PopPUNK in a publication, please do cite the original paper: John A Lees et al (2019).