Pathogenwatch
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Pathogenwatch
  • Welcome to Pathogenwatch
  • πŸŽ‰Announcements
  • ▢️A "Getting Started" Tutorial
  • 🎦Video Tutorials
  • 🧐Useful Links
  • πŸ“–How to use Pathogenwatch
  • πŸ“–Technical Descriptions
    • Species Assignment
    • Sequence Typing Methods
      • cgMLST
      • Genotyphi
      • Kaptive
      • Kleborate
      • Klebsiella LIN Codes
      • MLST
      • NG-MAST
      • Pangolin
      • PopPUNK
      • SeroBA
      • Vista
      • SISTR
    • Antimicrobial Resistance Prediction
    • Inctyper
    • cgMLST Clustering
    • SARS-CoV-2 Notable Mutations
    • SARS-CoV-2 Genome Tree
    • Core Genome Tree
    • Short Read Assembly
  • ❓FAQ
  • πŸ’ΎPublic data downloads
  • πŸ’ŠWHO bacterial priority pathogens
  • πŸ“œRelease Notes 2026
  • Release Notes 2025
  • Release Notes 2024
  • Release Notes 2023
  • Release Notes 2022
  • Release Notes 2019-2021
  • ⚠️Privacy and Terms Of Service
  • πŸ“£How to cite
  • πŸ™Acknowledgements
  • ❗Report an Issue
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  1. πŸ“–Technical Descriptions

Sequence Typing Methods

The sequence typing tools provided by Pathogenwatch are described in this section.

cgMLSTchevron-rightGenotyphichevron-rightKaptivechevron-rightKleboratechevron-rightKlebsiella LIN Codeschevron-rightMLSTchevron-rightNG-MASTchevron-rightPangolinchevron-rightPopPUNKchevron-rightSeroBAchevron-rightSISTRchevron-right
PreviousSpeciatorchevron-leftNextcgMLSTchevron-right

Last updated 1 year ago