Pathogenwatch
Pathogenwatch
CGPS
Oxford Big Data Institute
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Welcome to Pathogenwatch
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Announcements
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A "Getting Started" Tutorial
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Video Tutorials
Useful Links
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How to use Pathogenwatch
Technical Descriptions
Species Assignment
Sequence Typing Methods
cgMLST
Genotyphi
Kaptive
Kleborate
Klebsiella LIN Codes
MLST
NG-MAST
Pangolin
PopPUNK
SeroBA
Vista
SISTR
Antimicrobial Resistance Prediction
Inctyper
cgMLST Clustering
SARS-CoV-2 Notable Mutations
SARS-CoV-2 Genome Tree
Core Genome Tree
Short Read Assembly
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Release Notes 2023
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Release Notes 2022
Release Notes 2019-2021
Privacy and Terms Of Service
Acknowledgements
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Sequence Typing Methods
The sequence typing tools provided by Pathogenwatch are described in this section.
cgMLST
Genotyphi
Kaptive
Kleborate
Klebsiella LIN Codes
MLST
NG-MAST
Pangolin
PopPUNK
SeroBA
SISTR
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Speciator
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cgMLST
Last modified
3mo ago
