Pathogenwatch
Pathogenwatch
CGPS
Oxford Big Data Institute
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Welcome to Pathogenwatch
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Announcements
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A "Getting Started" Tutorial
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Video Tutorials
Useful Links
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How to use Pathogenwatch
Technical Descriptions
Species Assignment
Speciator
Sequence Typing Methods
Antimicrobial Resistance Prediction
Inctyper
cgMLST Clustering
SARS-CoV-2 Notable Mutations
SARS-CoV-2 Genome Tree
Core Genome Tree
Short Read Assembly
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FAQ
Public data downloads
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Release Notes 2023
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Release Notes 2022
Release Notes 2019-2021
Privacy and Terms Of Service
Acknowledgements
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Species Assignment
Pathogenwatch species assignments are generated using Speciator.
Speciator
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Speciator
Last modified
5yr ago
