Pathogenwatch
Ctrlk
  • Welcome to Pathogenwatch
  • ๐ŸŽ‰Announcements
  • โ–ถ๏ธA "Getting Started" Tutorial
  • ๐ŸŽฆVideo Tutorials
  • ๐ŸงUseful Links
  • ๐Ÿ“–How to use Pathogenwatch
  • ๐Ÿ“–Technical Descriptions
    • Species Assignment
    • Sequence Typing Methods
    • Antimicrobial Resistance Prediction
    • Inctyper
    • cgMLST Clustering
    • SARS-CoV-2 Notable Mutations
    • SARS-CoV-2 Genome Tree
    • Core Genome Tree
    • Short Read Assembly
  • โ“FAQ
  • ๐Ÿ’พPublic data downloads
  • ๐Ÿ’ŠWHO bacterial priority pathogens
  • ๐Ÿ“œRelease Notes 2025
  • Release Notes 2024
  • Release Notes 2023
  • Release Notes 2022
  • Release Notes 2019-2021
  • โš ๏ธPrivacy and Terms Of Service
  • ๐Ÿ“ฃHow to cite
  • ๐Ÿ™Acknowledgements
  • โ—Report an Issue
Powered by GitBook
On this page

๐Ÿ“–Technical Descriptions

Species AssignmentSequence Typing MethodsAntimicrobial Resistance PredictionInctypercgMLST ClusteringSARS-CoV-2 Notable MutationsSARS-CoV-2 Genome TreeCore Genome TreeShort Read Assembly
PreviousPrivate MetadataNextSpecies Assignment

Last updated 3 years ago