Pathogenwatch
Ctrlk
  • Welcome to Pathogenwatch
  • 🎉Announcements
  • ▶️A "Getting Started" Tutorial
  • 🎦Video Tutorials
  • 🧐Useful Links
  • 📖How to use Pathogenwatch
  • 📖Technical Descriptions
    • Species Assignment
    • Sequence Typing Methods
    • Antimicrobial Resistance Prediction
    • Inctyper
    • cgMLST Clustering
    • SARS-CoV-2 Notable Mutations
    • SARS-CoV-2 Genome Tree
    • Core Genome Tree
    • Short Read Assembly
  • ❓FAQ
  • 💾Public data downloads
  • 💊WHO bacterial priority pathogens
  • 📜Release Notes 2025
  • Release Notes 2024
  • Release Notes 2023
  • Release Notes 2022
  • Release Notes 2019-2021
  • ⚠️Privacy and Terms Of Service
  • 📣How to cite
  • 🙏Acknowledgements
  • ❗Report an Issue
Powered by GitBook
On this page

📖Technical Descriptions

Species AssignmentSequence Typing MethodsAntimicrobial Resistance PredictionInctypercgMLST ClusteringSARS-CoV-2 Notable MutationsSARS-CoV-2 Genome TreeCore Genome TreeShort Read Assembly
PreviousPrivate MetadataNextSpecies Assignment

Last updated 3 years ago