SISTR
SISTR (Salmonella In Silico Typing Resource) produces serovar predictions from whole-genome sequence assemblies by determination of antigen gene and cgMLST gene alleles using BLAST.
Pathogenwatch uses the
cgmlst_subspecies and serovar fields from the JSON output. https://hub.docker.com/r/ummidock/sistr_cmd is used as a base image.Last modified 4yr ago