SISTR

SISTR (Salmonella In Silico Typing Resource) produces serovar predictions from whole-genome sequence assemblies by determination of antigen gene and cgMLST gene alleles using BLAST.

Pathogenwatch uses the cgmlst_subspecies and serovar fields from the JSON output. https://hub.docker.com/r/ummidock/sistr_cmd is used as a base image.

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