Using The Interactive Collection Views

The "Collection View" consists of four interactive components:

  • A mutation distance based tree or network showing the relationships between the selected assemblies, visualised using PhyloCanvas.

  • A global map showing the locations of assemblies that have geospatial metadata.

  • A metadata display area that includes the user-supplied data, calculated typing assignments such as MLST and Genotyphi, and antimicrobial resistance predictions.

  • A query bar that allows the selection or finding of assemblies by searching the metadata fields.

The header row also contains links to the home page, and a "Downloads" button in the top right.

Clicking on the assembly name in a table brings up the detailed genome report.

pageThe Tree ViewerpageThe Filter BarpageThe Metadata TablespageThe Map View

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