Pathogenwatch provides pre-generated collections of publicly available genomes from important papers, surveys and in-house collections. These can be studied directly, and often represent the easiest way to use and download sequence and metadata associated with publications. You can also merge these collections with other sets of assemblies, including your own downloads, via the Genomes page.
If you are logged in, your collections will also be listed here, and can be filtered or visited in the same way as the public ones.
To help you find the collection you are looking for, you can filter the collections by organism, public or private ("Type"), and creation date.