Pathogenwatch
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  • 📖Technical Descriptions
    • Species Assignment
      • Speciator
    • Sequence Typing Methods
      • cgMLST
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    • Short Read Assembly
  • ❓FAQ
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  • 📜Release Notes 2025
  • Release Notes 2024
  • Release Notes 2023
  • Release Notes 2022
  • Release Notes 2019-2021
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On this page
  • General Information
  • Assembly FASTA & GFF Downloads
  • Visit sections below to see more about each table:
  1. How to use Pathogenwatch
  2. Using The Interactive Collection Views

The Metadata Tables

PreviousThe Filter BarNextUploaded Metadata

Last updated 4 years ago

General Information

The Metadata Tables display uploaded and calculated attributes for each assembly, grouped according to type. The tables take up the bottom section of the screen and buttons for selecting the metadata type for display float over the boundary of the tables and the .

Assemblies are sorted according to the order of the leaves on the rectangular tree, and can be selected by clicking on rows, or by clicking on column headers and then typing in the . Clicking on the assembly name in any table will bring up the for that assembly.

Clicking on column headers will also change the labels in the Tree Viewer, providing a convenient way of seeing how traits or attributes distribute.

Assembly FASTA & GFF Downloads

Assembly and descriptions of the , and matches are provided by clicking on the icons in the lefthand column. Clicking on the top of the column will downloads all files in the current collection as a single zip archive.

Visit sections below to see more about each table:

📖
Tree Viewer
Filter Bar
Genome Report
FASTAs
GFF
core genome
AMR
MLST
Uploaded Metadata
Typing Results
Genome Statistics
Antimicrobial Resistance