> For the complete documentation index, see [llms.txt](https://cgps.gitbook.io/data-flo/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://cgps.gitbook.io/data-flo/readme.md).

# About Data-flo

**Data-flo** (pronounced data-flow) is an open-source web application for data integration. It provides an easy-to-use visual interface to design reusable Workflows (data pipelines) that import, merge, clean, and manipulate data in many different ways. Once a Workflow has been created, it can be run anytime, by anyone with access, to enable push-button data extraction and transformation.

<figure><img src="https://lh7-us.googleusercontent.com/dUWpHeLPF9StYSWBZWz3xdKJqc-jCC5U87xJpbawhrdlYKtkusoj71GGnzUW_GVN0hZ9n2QKOn4PDkqt3u-lmz9kSf08hGkQ6ADs4c3PJxtuJmWLJshG9xSnhE4fafSRziZV_ugtRS2gj0tI5XFG3H0t0Q=s2048" alt=""><figcaption><p>A diagram of a Data-flo workflow indicating the different data sources and output destinations. </p></figcaption></figure>

### Why use Data-flo?

Data-flo saves you time by **removing the bulk of the manual repetitive workflows** that require multiple, sequential, or tedious steps, **enabling you to focus on analysis and interpretation**.

Armed with Data-flo, users can:

* Rapidly prepare data for visualization, and reporting&#x20;
* Easily share processed data between teams&#x20;
* Consistently reproduce and validate data transformation procedures for updated or new datasets&#x20;
* Seamlessly integrate data from multiple databases and sources
* Automatically update a [Microreact ](https://microreact.org/)project with fresh data

While Data-flo is used across many sectors (data science, academia, public health institutions etc.), it contains a number of features tailored to manage bioinformatics-related datasets such as Newick files, tree files, etc.&#x20;

## Citation

If you use Data-flo within a publication please cite:

> Centre for Genomic Pathogen Surveillance. 2019. Data-flo. <https://data-flo.io>. \[Date accessed].


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://cgps.gitbook.io/data-flo/readme.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
